Parkinson’s protein blueprint could help fast-track new treatments

Researchers have solved a decade-long mystery about a critical protein linked to Parkinson’s disease that could help to fast-track treatments for the incurable disease.

The research, published in Nature, has for the first time produced a ‘live action’ view of the protein, called PINK1, in exquisite molecular detail. The discovery explains how the protein is activated in the cell, where it is responsible for initiating the removal and replacement of damaged mitochondria. When the protein is not working correctly, it can starve brain cells of energy, causing them to malfunction and – in the long term – die, as happens to dopamine-producing cells in Parkinson’s disease.

The discovery is the culmination of a project spanning eight years and provides the first detailed blueprint for the discovery and development of therapeutic agents that could help to slow or even stop the progression of Parkinson’s disease.

Led by PhD student Mr Zhong Yan Gan and Professor David Komander, the multidisciplinary team at WEHI used innovative cryo-electron microscopy facilities and research to make the discovery.

At a glance

• WEHI researchers have, for the first time, visualised the entire process that leads to the activation of PINK1 – a protein directly linked to Parkinson’s disease.
• The team has been able to analyse each process that occurs from when PINK1 is initially made, to how defects in the protein lead to Parkinson’s disease.
• The enhanced understanding of the molecular basis of Parkinson’s disease created by the researchers has the potential to underpin new treatments.

Turning the switch off

Parkinson’s disease is a progressive neurodegenerative disease caused by the death of dopamine-producing cells in the brain. More than 10 million people worldwide are living with Parkinson’s disease, including more than 80,000 Australians. Currently there are no approved drugs that can slow or stop the progression of Parkinson’s disease, with available therapies only able to treat and alleviate symptoms.

PhD student and first author Zhong Yan Gan said the research provided an unprecedented view of a protein called PINK1, known to play a critical role in early onset Parkinson’s disease.

“Many papers from laboratories around the world – including ours – have captured snapshots of the PINK1 protein. However, the differences in these snapshots has in some ways fuelled confusion about the protein and its structure,” Mr Gan said.

“What we have been able to do is to take a series of snapshots of the protein ourselves and stitch them together to make a ‘live action’ movie that reveals the entire activation process of PINK1. We were then able to reconcile why all these previous structural images were different – they were snapshots taken at different moments in time as this protein was activated to perform its function in the cell.”

PINK1 protects the cell by tagging damaged mitochondria – the energy powerhouse of the cell – to be demolished and recycled. When there are defects in PINK1 or other components of the pathway, it starves the cell of energy by preventing the recycling and replacement of damaged mitochondria with healthy ones.

“One of the critical discoveries we made was that this protein forms a dimer – or pair – that is essential for switching on or activating the protein to perform its function. There are tens of thousands of papers on this protein family, but to visualise how this protein comes together and changes in the process of activation, is really a world-first,” Mr Gan said.

Drug discovery potential

Professor Komander said his lab’s discovery paved the way for developing therapeutic agents that ‘switch on’ PINK1 to treat Parkinson’s disease.

“There are currently no disease-modifying drugs available for Parkinson’s disease – that is no drugs that can slow progression of the disease or halt its development,” Professor Komander said.

Malfunctions in PINK1, or other parts of the pathway that control mitochondrial repair, is thought to be a key feature in certain cases of Parkinson’s disease. However, this information is particularly relevant for a subset of young people who develop Parkinson’s in their 20s, 30s and 40s due to hereditary mutations in PINK1.

Professor Komander said the discovery would lead to new opportunities to exploit this pathway for Parkinson’s disease therapies.

“Biotech and pharmaceutical companies are already looking at this protein and this pathway as a therapeutic target for Parkinson’s disease, but they have been flying a bit blind. I think they’ll be really excited to see this incredible new structural information that our team has been able to produce using cryo-EM. I’m really proud of this work and where it may lead,” he said.

World-class facilities

Dr Alisa Glukhova said the discovery was made possible thanks to the new custom-built cryo-EM facility jointly funded by WEHI and Bio21 Institute and WEHI’s recruitment of structural biologists with expertise in using the technology.

“This is the first time that we have used cryo-EM at WEHI to solve the structure of small proteins such as PINK1,” Dr Glukhova said.

“This revolutionary technique has only been available in the past five years, and this work was made possible because WEHI has invested in this facility and the expertise needed to make the best use of the technology. It is a great example of how innovative technologies can really drive forward research and lead to transformative discoveries.”

Parkinson’s disease research at WEHI is supported by the Australian National Health and Medical Research Council, The Michael J. Fox Foundation, Shake-It-Up Australia, a CSL Centenary Fellowship, Bodhi Foundation, Australian Government Research Training Program Scholarship and the Victorian Government, and benefits from generous philanthropic support, including Leon Davis AO and Annette Davis.

The cryo-EM work for this study was performed at the Bio21 Advanced Microscopy Facility and supported by the WEHI Information Technology Services and the WEHI Research Computing Platform.