image: A screenshot of the Check List data portal.
Credit: Pensoft Publishers
In collaboration with the Global Biodiversity Information Facility (GBIF), Pensoft has established hosted data portals for 25 open-access peer-reviewed journals published on the ARPHA Platform.
The initiative aims to make it easier to access and use biodiversity data associated with published research, aligning with principles of Findable, Accessible, Interoperable, and Reusable (FAIR) data.
The data portals offer seamless integration of published articles and associated data elements with GBIF-mediated records. Now, researchers, educators, and conservation practitioners can discover and use the extensive species occurrence and other data associated with the papers published in each journal.
The collaboration between Pensoft and GBIF was recently piloted with the Biodiversity Data Journal (BDJ). Today, the BDJ hosted portal provides seamless access and exploration for nearly 300,000 occurrences of biological organisms from all over the world that have been extracted from the journal’s all-time publications. In addition, the portal provides direct access to more than 800 datasets published alongside papers in BDJ, as well as to almost 1,000 citations of the journal articles associated with those publications.
“The release of the BDJ portal and subsequent ones planned for other Pensoft journals should inspire other publishers to follow suit in advancing a more interconnected, open and accessible ecosystem for biodiversity research,” said Dr. Vince Smith, Editor-in-Chief of BDJ and head of digital, data and informatics at the Natural History Museum, London.
"The programme will provide a scalable solution for more than thirty of the journals we publish thanks to our partnership with Plazi, and will foster greater connectivity between scientific research and the evidence that supports it," said Prof. Lyubomir Penev, founder and chief executive officer of Pensoft.
On the new portals, users can search data, refining their queries based on various criteria such as taxonomic classification, and conservation status. They also have access to statistical information about the hosted data.
Together, the hosted portals provide data on almost 325,000 occurrence records, as well as over 1,000 datasets published across the journals.
Additional information:
About Pensoft:
Pensoft is an independent, open-access publisher and technology provider, best known for its biodiversity journals, including ZooKeys, Biodiversity Data Journal, Phytokeys, Mycokeys, One Ecosystem, Metabarcoding and Metagenomics and many others.
Over the past 30 years, Pensoft has built a reputation for its innovations in the field, after launching ZooKeys: the very first digital-first scientific journal in zoology and the first to introduce semantic enrichments and hyperlinks within a biodiversity article.
To date, the company has continuously been working on various tools and workflows designed to facilitate biodiversity data findability, accessibility, discoverability and interoperability. The latest large projects, led by Pensoft include the OpenBiodiv knowledge graph and the Horizon 2020 project BiCIKL.
About GBIF:
GBIF—the Global Biodiversity Information Facility—is an international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth.
Coordinated through its Secretariat in Copenhagen, the GBIF network of participating countries and organizations, working through the participant nodes, provides data-holding institutions around the world with common standards, best practices and open-source tools enabling them to share information about where and when species have been recorded. This knowledge derives from many different kinds of sources, including everything from museum specimens collected in the 18th and 19th century to DNA barcodes and smartphone photos recorded in recent days and weeks.