A novel approach to mapping and engineering enzymes for enhanced plastic recycling

Polyethylene terephthalate (PET) is one of the most widely used plastics, commonly found in bottles, fibers, and many other products. It is a unique member of the plastic family as it can be broken down into its constituent units (or monomers) by PETases, which are enzymes that degrade PET. Until now, scientists have discovered a variety of PETases in nature, including from bacteria, Ideonella sakaiensis, and leaf-compost cutinase. These biocatalysts have been modified for industrial applications.

Decomposing contaminated PET under mild conditions and producing high-purity monomers is currently a critical focus in plastic recycling technology, highlighting its need for more such efficient biocatalysts.

Taking a major step in this direction, a team of researchers from Kyungpook National University (KNU), led by Kyung-Jin Kim, Professor of Life Science and Biotechnology and Head of KNU Institute for Microorganisms, has come up with an innovative landscape profiling method to determine the potential of naturally occurring microbial enzymes to degrade PET plastics. Their novel findings, expected to help solve the existing problems in the recycling industry, were published online in Volume 387, Issue 6729 of the renowned journal Science on January 03, 2025.

This study explores various aspects of this little-explored field, from landscaping of genetic sequences to screening for high-fitness enzymes, engineering them, and evaluating their performance under industrial conditions. Specifically, the researchers employed a novel clustering approach to screen around 2000 candidate enzymes across several families. This produced a view of landscape proficiency and stability in terms of the fitness of promiscuous enzymes. As a result, the team could identify peaks corresponding to potentially highly efficient enzymes for further testing and optimization. Subsequently, they successfully engineered enzymes Mipa-P and Kubu-P through sequential mutagenesis, which exhibited excellent performance compared to benchmarks under extreme conditions typically present in recycling applications.

"We were particularly excited to observe that Kubu-P^M12 thrives under industrial conditions. Its ability to handle high PET loads and withstand elevated temperatures, coupled with its impressive activity at lower temperatures, is highly advantageous. This makes it a promising candidate for real-world applications." Prof. Kim exclaims.

According to Prof. Kim, the future of plastic recycling technology is bright with the present innovation. “The novel enzymes discovered through this method will enable the continuous recycling process of PET at lower temperatures and higher productivity. Furthermore, this landscaping method of protein sequences proposed in this study may allow for the classification categories of the chaotic enzyme family to be established in detail, which will allow scientists to more easily predict and understand enzyme function. As biocatalytic recycling becomes industrially viable, it will be possible to offset the growing demand for virgin PET from crude oil through fully closed PET recycling.” shares Prof. Kim.

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Reference                          

Title of original paper: Landscape profiling of PET depolymerases using a natural sequence cluster framework

Journal: Science

DOI: https://doi.org/10.1126/science.adp5637

About Kyungpook National University

Kyungpook National University (KNU) is a national university located in Daegu, South Korea. Founded in 1946, it is committed to becoming a leading global university based on its proud and lasting tradition of truth, pride, and service. As a comprehensive national university representing the regions of Daegu and Gyeongbuk Province, KNU has been striving to lead Korea’s national and international development by fostering talented graduates who can serve as global community leaders.

Website: https://en.knu.ac.kr/main/main.htm

About the author

Prof. Kyung-Jin Kim is a Professor of Life Science and Biotechnology and Head of KNU Institute for Microorganisms at Kyungpook National University (KNU). His group is designing PET-degrading enzymes and developing technologies for biological recycling. Kim group is also developing various enzyme variants involving metabolic pathways for synthetic biology. Before coming to KNU in 2012, he was a team leader of MX group in Pohang Accelerator Laboratory. He completed the Postdoctoral training at Argonne National Laboratory in 2002. In 1999, Prof. Kim received a PhD from Illinois Institute of Technology.