Cloud computing captures chemistry code

RICHLAND, Wash.—Some computing challenges are so big that it’s necessary to go all in. That’s the approach a diverse team of scientists and computing experts led by the Department of Energy’s Pacific Northwest National Laboratory, along with colleagues from Microsoft and other national laboratories and universities, are taking to democratize access to emerging cloud computing resources. 

The effort, outlined in a recent peer-reviewed journal publication, provides a road map to moving scientific computing resources into a sustainable ecosystem that evolves as the technology advances. The research team demonstrated that cloud computing provides an agile, nimble complement to the powerful leadership computing facilities that have been the scientific computing workhorses for decades. 

“This is an entirely new paradigm for scientific computing,” said PNNL computational chemist Karol Kowalski, who led the cross-disciplinary effort. “We have shown that it’s possible to bundle software as a service with cloud computing resources. This initial proof-of-concept shows that cloud computing can provide a menu of options to complement and supplement high-performance computing for solving complex scientific problems.”

Sustainable software in the cloud

The cloud has moved well beyond a place to park an archive of photos and documents. The computing industry has moved to providing compute as a service to financial and pharmaceutical companies, among other industries. In this initiative, the research team focused on porting to the cloud computationally intensive algorithms used to determine the feasibility of proposed new chemicals for industry, advanced polymers, surface coatings and a host of other applications. 

The initiative, called Transferring Exascale Computational Chemistry to Cloud Computing Environment and Emerging Hardware Technologies (TEC⁴), builds on momentum from within the computational chemistry community to port computing resources to users, recognizing the need for continued adaptation of software to meet both scientific needs and hardware evolution.

In their latest perspective article, the team provides information and technical data on the performance of both legacy computing algorithms, such as the popular NWChem software developed originally at PNNL, and the latest software designed to exploit the most advanced graphics processing unit (GPU) architectures. Their results showed that the speed and agility of cloud computing opens doors to completing advanced computational chemistry workflows in days instead of months. 

“Microsoft’s goal is to empower the scientific community to accelerate scientific discovery,” said Nathan Baker, product leader for Microsoft’s Azure Quantum Elements. “This collaboration with PNNL is a great example of how modern AI [artificial intelligence] and HPC tools can advance computational chemistry.”

Filling an urgent need for energy solutions

Over the past decade, computational chemistry has shown its ability to not only solve complex science challenges but also to guide and interpret experiments, and ultimately to enable predictions. The most complex of these challenges are best served by the resources available at DOE’s leadership computing facilities, particularly exascale computing capabilities. 

As the tools and techniques have advanced, so has the time and cost of arriving at a solution. The leadership team at TEC⁴ recognized that cloud computing and industry collaboration afforded an opportunity to access computing resources for a wider variety of problem solving.

For example, the team used Microsoft Azure and sophisticated workflows to investigate molecular dynamics of complex chemistry problems. These simulations are useful for studying complex reactions that are difficult to observe experimentally. This powerful tool, used to investigate molecular interactions at the atomic level, requires significant computational resources because of its complexity. Here, the research team demonstrated a pathway toward breaking down the persistent environmental pollutant perfluorooctanoic acid. It’s an example of how computational chemistry can be used to design real-world strategies in environmental remediation.

“We envision an ecosystem of use cases from low-tier to high-tier jobs that take advantage of GPU-based computing now being used extensively for artificial intelligence and machine learning applications,” said Kowalski. “We want to allow users to take advantage of different layers of compute, paying only for what’s needed and bundling software with compute access. This is the first step toward that future state.”

A cloud computing ecosystem

The team is actively recruiting new collaborators both on the developer side and the user side to build a user base to test the new cloud ecosystem. 

“We are building a family of codes,” Kowalski added. “The goal is to build a community around this effort.”

Along those lines, the team outlines its plan to train a cadre of students who are proficient in using these tools and will help fill the need for scientists capable of moving computational techniques into the future. The collaboration has led to a new course offered at the University of Texas at El Paso, with Central Michigan University and PNNL as collaborators starting in autumn 2024.

A full list of contributors and funding support is available here. 

The research was primarily supported by TEC⁴, which is funded by the DOE Office of Science, Basic Energy Sciences program, Division of Chemical Sciences, Geosciences, and Biosciences. Additional support was provided by the Department of Defense Strategic Environmental Research and Development Program and internal PNNL investments. The development of NWChem, NWChemEx, and Arrows also used resources of the Environmental Molecular Sciences Laboratory, a DOE user facility located at PNNL, and the National Energy Research Scientific Computing Center, a DOE user facility located at Lawrence Berkeley National Laboratory.

Several PNNL contributors are members of the PNNL Computational and Theoretical Chemistry Institute (CTCI), which is accelerating chemistry software and methods development to solve critical challenges in mission areas such as scientific discovery for sustainable energy. By expediting the integration of chemistry software development with computer science efforts, quantum computing, novel datasets and data science tools like artificial intelligence and machine learning, the CTCI is advancing the development of next-generation molecular modeling capabilities.

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ABOUT PNNL

Pacific Northwest National Laboratory draws on its distinguishing strengths in chemistry, Earth sciences, biology and data science to advance scientific knowledge and address challenges in sustainable energy and national security. Founded in 1965, PNNL is operated by Battelle for the Department of Energy’s Office of Science, which is the single largest supporter of basic research in the physical sciences in the United States. DOE’s Office of Science is working to address some of the most pressing challenges of our time. For more information, visit https://www.energy.gov/science/. For more information on PNNL, visit PNNL's News Center. Follow us on Twitter, Facebook, LinkedIn and Instagram.