Harnessing hydrogen at life’s origin

A new report uncovers how hydrogen gas, the energy of the future, provided energy in the past, at the origin of life 4 billion years ago. Hydrogen gas is clean fuel. It burns with oxygen in the air to provide energy with no CO₂. Hydrogen is a key to sustainable energy for the future. Though humans are just now coming to realize the benefits of hydrogen gas (H₂ in chemical shorthand), microbes have known that H₂ is good fuel for as long as there has been life on Earth. Hydrogen is ancient energy. The very first cells on Earth lived from H₂ produced in hydrothermal vents, using the reaction of H₂ with CO₂ to make the molecules of life. Microbes that thrive from the reaction of H₂ and CO₂ can live in total darkness, inhabiting spooky, primordial habitats like deep-sea hydrothermal vents or hot rock formations deep within the Earth’s crust, environments where many scientists think that life itself arose. Surprising new insights about how the first cells on Earth came to harness H₂ as an energy source are now reported in PNAS. The new study comes from the team of William F. Martin at the University of Düsseldorf and Martina Preiner at the Max Planck Institute (MPI) for Terrestrial Microbiology in Marburg with support from collaborators in Germany and Asia.

In order to harvest energy, cells first have to push the electrons from H₂ energetically uphill.  “That is like asking a river to flow uphill instead of downhill, so cells need engineered solutions,” explains one of the three first authors of the study, Max Brabender. How cells solve that problem was discovered only 15 years ago by Wolfgang Buckel together with his colleague Rolf Thauer in Marburg. They found that cells send the two electrons in hydrogen down different paths. One electron goes far downhill, so far downhill that it sets something like a pulley (or a siphon) in motion that can pull the other electron energetically uphill. This process is called electron bifurcation. In cells, it requires several enzymes that send the electrons uphill to an ancient and essential biological electron carrier called ferredoxin. The new study shows that at pH 8.5, typical of naturally alkaline vents, “no proteins are required,” explains Buckel, co-author on the study, “the H–H bond of H₂ splits on the iron surface, generating protons that are consumed by the alkaline water and electrons that are then easily transferred directly to ferredoxin.”

How an energetically uphill reaction could have worked in early evolution, before there were enzymes or cells, has been a very tough puzzle. “Several different theories have proposed how the environment might have pushed electrons energetically uphill to ferredoxin before the origin of electron bifurcation,“ says Martin, “we have identified a process that could not be simpler and that works in the natural conditions of hydrothermal vents”.

Since the discovery of electron bifurcation, scientists have found that the process is both ancient and absolutely essential in microbes that live from H₂. The vexing problem for evolutionarily-minded chemists like Martina Preiner, whose team in Marburg focusses on the impact of the environment on reactions that microbes use today and possibly used at life’s origin, is: How was H₂ harnessed for CO₂ fixing pathways before there were complicated proteins? “Metals provide answers,”, she says, “at the onset of life, metals under ancient environmental conditions can send the electrons from H₂ uphill, and we can see relicts of that primordial chemistry preserved in the biology of modern cells.” But metals alone are not enough. “H₂ needs to be produced by the environment as well” adds co-first author Delfina Pereira from Preiner’s lab. Such environments are found in hydrothermal vents, where water interacts with iron-containing rocks to make H₂ and where microbes still live today from that hydrogen as their source of energy.

Hydrothermal vents, both modern and ancient, generate H₂ in such large amounts that the gas can turn iron-containing minerals into shiny metallic iron. “That hydrogen can make metallic iron out of minerals is no secret” says Harun Tüysüz, expert for high-tech materials at the Max-Planck-Institut für Kohlenforschung Mülheim and coauthor on the study. “Many processes in chemical industry use H₂ to make metals out of minerals during the reaction.” The surprise is that nature does this too, especially at hydrothermal vents, and that this naturally deposited iron could have played a crucial role at the origin of life.

Iron was the only metal identified in the new study that was able to send the electrons in H₂ uphill to ferredoxin. But the reaction only works under alkaline conditions like those in a certain type of hydrothermal vents.  Natalia Mrnjavac from the Düsseldorf group and co-first author on the study points out:  “This fits well with the theory that life arose in such environments. The most exciting thing is that such simple chemical reactions can close an important gap in understanding the complex process of origins, and that we can see those reactions working under the conditions of ancient hydrothermal vents in the laboratory today.”