SSRgenotyper Workflow (IMAGE)

Botanical Society of America

SSRgenotyper Workflow

Caption

A workflow depicting the process of SSR discovery, DNA amplification, and read mapping. Once SSRs have been identified and mapped, that information can be exported as a SAM to SSRgenotyper to perform all relevant genotyping, the removal of spurious alleles, and filtering. The genotyping results can then be exported in several file times for further downstream analyses.

Credit

Lewis, D. H., D. E. Jarvis, and P. J. Maughan. 2020. SSRgenotyper: A simple sequence repeat genotyping application for whole-genome resequencing and reduced representational sequencing projects. <i>Applications in Plant Sciences</i> 8(12): e11402. https://doi.org/10.1002/aps3.11402

Usage Restrictions

Please cite the article: Lewis, D. H., D. E. Jarvis, and P. J. Maughan. 2020. SSRgenotyper: A simple sequence repeat genotyping application for whole-genome resequencing and reduced representational sequencing projects. <i>Applications in Plant Sciences</i> 8(12): e11402. https://doi.org/10.1002/aps3.11402 Articles and materials published in <i>Applications in Plant Sciences</i> are licensed under a Creative Commons Attribution license (CC-BY-NC).

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