Overview of the S. commersonii haplotype-resolved genome. (IMAGE)

Nanjing Agricultural University The Academy of Science

Overview of the S. commersonii haplotype-resolved genome.

Caption

Overview of the S. commersonii haplotype-resolved genome. a Phenotype of diploid CMM5. Scale bar represents 1.5 cm. b Circos diagram of the CMM5 genome. I, average GC content per window; II, gene density per window; III, repeat sequence content per window; IV, average LAI index per window; V, colinearity blocks between two haplotypes. The window size is 1 Mb. c Hi-C interaction heat map of the 12 chromosomes of the CMM5_Hap1 subgenome. d Hi-C interaction heat map of the 12 chromosomes of the CMM5_Hap2 subgenome. e Mapping rates of HiFi, Illumina and RNA-seq reads in CMM5_Hap1 and CMM5_Hap2. f Visualization of HiFi read coverage for CMM5_Hap1 subgenome. g Visualization of HiFi read coverage for CMM5_Hap2 subgenome.

Credit

Horticulture Research

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